DreEX0028213 @ danRer10
Exon Skipping
Gene
ENSDARG00000024744 | dpp6b
Description
dipeptidyl-peptidase 6b [Source:ZFIN;Acc:ZDB-GENE-070705-88]
Coordinates
chr2:12760268-12798313:-
Coord C1 exon
chr2:12798261-12798313
Coord A exon
chr2:12788772-12788853
Coord C2 exon
chr2:12760268-12760388
Length
82 bp
Sequences
Splice sites
3' ss Seq
AGTTGTTTGTGTTTTGACAGAGA
3' ss Score
5.9
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATTTATCAGTATTCCTTCATGGCGTATTACATCATCTGCAGCCTTGATTCTCC
Seq A exon
AGAGAGAGTGGAACTGACCCCTAATGAGGTGCAGAGCACCGCACTGCAGTATGCCGGATGGGGTCCCAAAGGACAGCAGCTG
Seq C2 exon
ATTTTCATCTTTGAAAATAACATCTACTACAAAGCACAAGTCAACAGCCCATCAATCCGCCTGGTGTCCACAGGCAGTCTGGGGGTCATATTTAATGGACTTGCTGACTGGCTCTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024744-'8-9,'8-7,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.6=100)
A:
PF0093016=DPPIV_N=FE(7.4=100)
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTATTCCTTCATGGCGT
R:
CATAGAGCCAGTCAGCAAGTCC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]