MmuEX0015600 @ mm10
Exon Skipping
Gene
ENSMUSG00000061576 | Dpp6
Description
dipeptidylpeptidase 6 [Source:MGI Symbol;Acc:MGI:94921]
Coordinates
chr5:27537982-27598922:+
Coord C1 exon
chr5:27537982-27538034
Coord A exon
chr5:27557552-27557633
Coord C2 exon
chr5:27598802-27598922
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGTCTGTCTCCTCAGGGA
3' ss Score
12.17
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTATACCAACACTCCCACACTGGATATTATGTTCTGAGCAAAATTCCTCATGG
Seq A exon
GGACCCTCAGAGTCTGGACCCACCAGAAGTCAGCAACGCAAAGCTTCAGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTG
Seq C2 exon
ATATTTATCTTTGAGAACAACATCTACTACTGTGCACACGTTGGAAAGCAGGCAATTCGAGTGGTCTCTACAGGGAAGGAGGGCGTGATCTACAATGGCCTCAGTGACTGGCTGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061576_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.6=100)
A:
PF0093016=DPPIV_N=FE(7.4=100)
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAACACTCCCACACTGGA
R:
TCATACAGCCAGTCACTGAGG
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types