HsaEX6011433 @ hg19
Exon Skipping
Gene
ENSG00000130226 | DPP6
Description
dipeptidyl-peptidase 6 [Source:HGNC Symbol;Acc:3010]
Coordinates
chr7:154429531-154519597:+
Coord C1 exon
chr7:154429531-154429583
Coord A exon
chr7:154461070-154461151
Coord C2 exon
chr7:154519477-154519597
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTCAATTTTCAGGGA
3' ss Score
9.4
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
ATATATCAACACTCGTATACTGGATATTACGTCCTGAGCAAAATTCCTCATGG
Seq A exon
GGATCCTCAAAGTCTGGACCCACCAGAAGTCAGCAATGCAAAACTTCAGTATGCAGGATGGGGCCCTAAAGGCCAACAGCTG
Seq C2 exon
ATATTTATTTTTGAAAACAATATCTACTACTGTGCACATGTCGGGAAACAGGCCATCCGTGTGGTCTCCACTGGCAAGGAAGGTGTGATTTACAATGGCCTCAGTGACTGGCTGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130226-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.6=100)
A:
PF0093016=DPPIV_N=FE(7.4=100)
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACACTCGTATACTGGATATTACG
R:
TCATACAGCCAGTCACTGAGG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)