RnoEX0029660 @ rn6
Exon Skipping
Gene
ENSRNOG00000030547 | Dpp6
Description
dipeptidyl peptidase like 6 [Source:RGD Symbol;Acc:68402]
Coordinates
chr4:4149939-4222367:-
Coord C1 exon
chr4:4222315-4222367
Coord A exon
chr4:4196574-4196655
Coord C2 exon
chr4:4149939-4150059
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGTCTATCTCTTCAGGGA
3' ss Score
11.67
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTATACCAACACTCCCACACTGGATATTATGTTCTGAGCAAAATTCCTCACGG
Seq A exon
GGACCCTCAGAGTCTGGACCCACCAGAAGTCAGCAACGCGAAGCTTCAGTATGCAGGGTGGGGCCCGAAAGGCCAGCAGCTG
Seq C2 exon
ATATTTATCTTTGAGAACAACATCTACTACTGTGCCCATGTTGGAAAGCAGGCGATTCGAGTGGTCTCTACGGGGAAGGAGGGTGTGATCTACAATGGCCTCAGCGACTGGCTGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030547_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(27.9=100)
A:
PF0093016=DPPIV_N=FE(44.3=100)
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAACACTCCCACACTGGA
R:
CAGTCGCTGAGGCCATTGTAG
Band lengths:
160-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]