DreEX6093921 @ danRer10
Exon Skipping
Gene
ENSDARG00000076826 | dpp6a
Description
dipeptidyl-peptidase 6a [Source:ZFIN;Acc:ZDB-GENE-090918-4]
Coordinates
chr24:6719857-6738560:-
Coord C1 exon
chr24:6738508-6738560
Coord A exon
chr24:6732057-6732138
Coord C2 exon
chr24:6719857-6719977
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCTTTGCTTGTCTTTCGCAGGGA
3' ss Score
10.69
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
GTTTACGAGCACTCCTTCACCGCGGACTACATCATTTGCAGCCTGGAAACTCC
Seq A exon
GGAAACGTGGATCCTGAACCCTCCTGAAGTCAGAAATGCCCATCTGCAGTATGCTGGATGGGGACCACGAGGCCAGCAGCTG
Seq C2 exon
ATCTTTATATTCGAGAATAATATCTACTACCGGGCCACAGTGGAGAACAGATCCATTCGTCTGGTTTCTACCGGGAAGGAGGGTGTGATATTCAATGGCCTCACCGACTGGCTCTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076826-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.6=100)
A:
PF0093016=DPPIV_N=FE(7.4=100)
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACGAGCACTCCTTCACCG
R:
TCATAGAGCCAGTCGGTGAGG
Band lengths:
171-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]