GgaEX1020895 @ galGal4
Exon Skipping
Gene
ENSGALG00000006314 | DPP6
Description
dipeptidyl-peptidase 6 [Source:HGNC Symbol;Acc:HGNC:3010]
Coordinates
chr2:7531723-7560064:+
Coord C1 exon
chr2:7531723-7531775
Coord A exon
chr2:7544147-7544228
Coord C2 exon
chr2:7559944-7560064
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTCTCTTTTGCAGGGA
3' ss Score
12.58
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATCTATCGGCATTCATACACAGCGCATTATGTCCTCAGCAAAATTCCTCACGG
Seq A exon
GGATCCCCAGAATTTGTATCCCCCTGAGGTCAGCAATGCAAAGCTTCAGTATGCTGGTTGGGGTCCAAAAGGGCAACAGCTG
Seq C2 exon
ATTTTTATCTTCGAGAATAACATCTACTACTGTGCCCACGTGGGGAAACAAGCCATTCGAGTGGTCTCCACGGGAAAGGAAGGTGTTATTTTCAATGGGCTCAGCGACTGGCTATATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006314-'10-14,'10-12,11-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(26.6=100)
A:
PF0093016=DPPIV_N=FE(42.2=100)
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGCATTCATACACAGCGC
R:
CAGTCGCTGAGCCCATTGAAA
Band lengths:
159-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]