HsaEX6011433 @ hg38
Exon Skipping
Gene
ENSG00000130226 | DPP6
Description
dipeptidyl peptidase like 6 [Source:HGNC Symbol;Acc:HGNC:3010]
Coordinates
chr7:154637821-154727887:+
Coord C1 exon
chr7:154637821-154637873
Coord A exon
chr7:154669360-154669441
Coord C2 exon
chr7:154727767-154727887
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTCAATTTTCAGGGA
3' ss Score
9.4
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
ATATATCAACACTCGTATACTGGATATTACGTCCTGAGCAAAATTCCTCATGG
Seq A exon
GGATCCTCAAAGTCTGGACCCACCAGAAGTCAGCAATGCAAAACTTCAGTATGCAGGATGGGGCCCTAAAGGCCAACAGCTG
Seq C2 exon
ATATTTATTTTTGAAAACAATATCTACTACTGTGCACATGTCGGGAAACAGGCCATCCGTGTGGTCTCCACTGGCAAGGAAGGTGTGATTTACAATGGCCTCAGTGACTGGCTGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130226-'31-57,'31-54,34-57
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(26.6=100)
A:
PF0093016=DPPIV_N=FE(7.4=100)
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACACTCGTATACTGGATATTACG
R:
TCATACAGCCAGTCACTGAGG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains