DreEX0030077 @ danRer10
Exon Skipping
Gene
ENSDARG00000044795 | entpd2b
Description
ectonucleoside triphosphate diphosphohydrolase 2b [Source:ZFIN;Acc:ZDB-GENE-061013-2]
Coordinates
chr21:11416833-11420376:+
Coord C1 exon
chr21:11416833-11416974
Coord A exon
chr21:11419478-11419595
Coord C2 exon
chr21:11420226-11420376
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATGTTTGTCTTTCACTGCAGTAT
3' ss Score
8.72
5' ss Seq
AAGGTCAAT
5' ss Score
3.77
Exon sequences
Seq C1 exon
CAGCAGGCAGACCCCAATTCTCCTGATGGATAAACTGTTTGTTAAGTTTGTTGCCTCAGGATCGCTCCTTCTGTTCGGAATTGTGTCTATTTTGCTCCTGACTGTATCTATACATGAAATAAGAGAGCCTGCTCAGTACATG
Seq A exon
TATGGAATTGTGCTGGACGCTGGGTCATCACACACAGCCTTGTACGTCTACAAATGGCCTGCAGATAAGTTAAATGGCACAGGAGTGGTCACCCAACACAGCGAGTGTCACGTAAAAG
Seq C2 exon
GAGGAGGAATATCTGGTTATGCAGGTCAGCGAGGAGCAGCAGGACGCAGCCTGGAGCTGTGCTTGAAGCAAGCCGTGCTGGACATTCCCCCACATAGACATCACCTCACCCCAGTGTACCTTGGAGCTACTGCTGGTATGAGACTTCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044795-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.8=16.7)
A:
PF0115012=GDA1_CD39=FE(9.0=100)
C2:
PF0115012=GDA1_CD39=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGACCCCAATTCTCCTGA
R:
GGTACACTGGGGTGAGGTGAT
Band lengths:
257-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]