DreEX0032798 @ danRer10
Exon Skipping
Gene
ENSDARG00000063682 | fhod3a
Description
formin homology 2 domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-060503-633]
Coordinates
chr19:762276-764712:+
Coord C1 exon
chr19:762276-762480
Coord A exon
chr19:763696-763719
Coord C2 exon
chr19:764517-764712
Length
24 bp
Sequences
Splice sites
3' ss Seq
ACTTGTGTTTCTCACCACAGACT
3' ss Score
9.65
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
GTTCCACTCGTTCCTGCTGTTCCTGGGTCAGCCGGCGTACAGCGTGCGGGAGATCAGCGTGACGCGCTTCAGTAAGATCATCAGTGAGTTCGCTCTGGAGTATCGAACCACACGAGAGCGAGTCCTGCAGCAGAAGCAGAAACGAGCCGATCACAGAGAGAGGAACAAGACTCGCGGGAAGATGATCACCGACGTCAACACACAG
Seq A exon
ACTGATGATGAAGAGGACAGTGAG
Seq C2 exon
GCAGCAGGTCGTGTGTGTGTGAGCAGCAGCAGTAGTGCGCCTCCTGCAGGGCCGCAGATGCAGGTGCAGCCACAGCCACAGCCGTCGCAGCCGCAGGGTTTGTGTGACGCTGAAGATGCAGCCGAACACCAGCAGATGACGGCGGTGCTGAAAACCAGAGACCTGAGGACACGCACACGCACACGAGCAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063682_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=1.000 C2=0.985
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=50.7)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGAAACGAGCCGATCA
R:
CTACTGCTGCTGCTCACACAC
Band lengths:
108-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]