DreEX0033100 @ danRer10
Exon Skipping
Gene
ENSDARG00000012586 | fmnl2a
Description
formin-like 2a [Source:ZFIN;Acc:ZDB-GENE-081105-70]
Coordinates
chr9:4788281-4797380:-
Coord C1 exon
chr9:4797207-4797380
Coord A exon
chr9:4794536-4794556
Coord C2 exon
chr9:4788281-4788405
Length
21 bp
Sequences
Splice sites
3' ss Seq
TACCTTTTGTATTGGCATAGAGG
3' ss Score
4.18
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
Exon sequences
Seq C1 exon
TACTAAATGGTCCGTCTGCAGCTCCGGCACCAGCTCCTCCACCTCCTCCTCCACCTCCCCCTCCTCCTCTTCCCGTAGATATATCTGCCCCTATGCCCCCTCCACCACCCCCCATGGCTCCTCCGCTTCCTGGCTGTGGTTCGCCCACCGTCATCATGAACTCGGGATTGGCAG
Seq A exon
AGGGACCCATCAAACTGTACT
Seq C2 exon
CTGTGAAAATCAAGAAACCCATCAAGACGAAGTTCCGCATGCCCGTGTTCAATTGGGTGGCGCTGAAACCCAATCAGATCAATGGCACCGTCTTCAACGAGATCGACGATGAAAGAATACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012586_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218118=FH2=PU(10.4=90.5)
Main Inclusion Isoform:
ENSDART00000016814fB2794
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGTCATCATGAACTCGGG
R:
ATCTGATTGGGTTTCAGCGCC
Band lengths:
108-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]