DreEX0033120 @ danRer10
Exon Skipping
Gene
ENSDARG00000004372 | fmnl3
Description
formin-like 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1571]
Coordinates
chr23:25485235-25487678:+
Coord C1 exon
chr23:25485235-25485318
Coord A exon
chr23:25485616-25485750
Coord C2 exon
chr23:25487570-25487678
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCCTTGTGTTCGCGACTCAGGTT
3' ss Score
7.19
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
GTGGGTTCGCGAGTTCCTCAATGATGAGAACAGAGGTCTGGACATCCTGGTGGAGTATCTGTCATTCGCCCAGTGTGCCGTCAT
Seq A exon
GTTGGATTTTGAAGGGCTGGAGAATGGCGAGGACTTTTCGCTGGACAAGGCTAAGTCCTGGAGCAGGTCCATTGAGGATCTGCACCAGAACGGCTGCAATACGCTGGTTCGCTCTGCGCGGCAGTCCGTCCTCCG
Seq C2 exon
CTATGGCTCAACTTCTAACAGCAAAACCATCAAGAACTCCAGATTGGTTAGTCAAAAGGACGATGTACATGTGTGCATCATGTGCCTCAGAGCCATCATGAACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004372_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(24.5=89.7)
A:
PF063718=Drf_GBD=PU(3.8=6.5)
C2:
PF063718=Drf_GBD=FE(45.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTCGCGAGTTCCTCAATG
R:
AGTTCATGATGGCTCTGAGGC
Band lengths:
186-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]