DreEX0034074 @ danRer10
Exon Skipping
Gene
ENSDARG00000027419 | gad1b
Description
glutamate decarboxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030909-3]
Coordinates
chr6:3668214-3673883:+
Coord C1 exon
chr6:3668214-3668341
Coord A exon
chr6:3670045-3670107
Coord C2 exon
chr6:3673740-3673883
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTCCAAACGTCTCGTTTTAGCCT
3' ss Score
4.82
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TGTCAGATTTTTCCATTCAGTCTGAAAGCATTGAGGTGTTTCCCGTGGACTGATGGCGTCTTCTGCACCTTCTTCCTCGGCTGGTGATATGGACCCAAACACGGCTAATTTACGACAACCTGCCACAA
Seq A exon
CCTCGGACGCGTGGTACGGGGTTGCACACGGATGCACGAGGAAACTGGGCATGAAGATCTGTG
Seq C2 exon
GTTTCCTGCAGAAGAACAACAGTTTGGATGAGAAGAGTCGTATGGTGGGCTCCTTCAAGGAGAGCGCCAAGAACCAGATGTCGTGCGACAACAATGAGCGCTTCACGCGCGATGAGACAGATTTCTCCAACCTGTTCGCGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027419_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.000 C2=0.347
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACTGATGGCGTCTTCTG
R:
TTGAAGGAGCCCACCATACGA
Band lengths:
142-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]