DreEX0034152 @ danRer10
Exon Skipping
Gene
ENSDARG00000061335 | galnt1
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2360]
Coordinates
chr16:27206760-27215736:+
Coord C1 exon
chr16:27206760-27206899
Coord A exon
chr16:27215405-27215503
Coord C2 exon
chr16:27215602-27215736
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTGATCTGTCCGATTGCAGATC
3' ss Score
10.56
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GTGTGACGAAAGTGGATTATGGAGACATCTCAACCAGAACATCCCTGAGACAGAGACTGCAATGCAAGCCCTTCTCCTGGTACCTGGAAAATGTCTACCCAGACTCACAGATACCACGCCACTACTACTCACTGGGAGAG
Seq A exon
ATCCGTAATGTGGAGACTAACCAGTGTCTGGATAACATGGCCAGAAAAGAGAATGAGAAAGTGGGCATTTTCAACTGCCATGGCATGGGCGGTAACCAG
Seq C2 exon
GTTTTCTCATACACAGCCAATAAAGAGATCCGAACTGATGATCTCTGTTTGGATGTTTCCAAACTCAATGGCCCGGTTATGATGCTCAAGTGCCATCATTTGAAAGGCAACCAGCTCTGGGAATATGACCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061335-'16-17,'16-16,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
A:
PF0065217=Ricin_B_lectin=FE(26.9=100)
C2:
PF0065217=Ricin_B_lectin=FE(37.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCCTTCTCCTGGTACCT
R:
ACTTGAGCATCATAACCGGGC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]