RnoEX0037564 @ rn6
Exon Skipping
Gene
ENSRNOG00000016207 | Galnt1
Description
polypeptide N-acetylgalactosaminyltransferase 1 [Source:RGD Symbol;Acc:620358]
Coordinates
chr18:16173422-16181893:+
Coord C1 exon
chr18:16173422-16173561
Coord A exon
chr18:16180831-16180929
Coord C2 exon
chr18:16181759-16181893
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCCATTGTCCCACAGATA
3' ss Score
11.28
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGTTACAAAGGTAGATTATGGTGATATATCATCAAGAGTCGGTCTGAGACATAAACTACAGTGCAAGCCTTTCTCTTGGTACCTAGAAAATATTTATCCCGATTCTCAAATTCCTCGTCACTATTTCTCATTGGGAGAG
Seq A exon
ATACGAAATGTGGAAACAAATCAATGTCTAGATAACATGGCTAGAAAAGAGAATGAAAAGGTTGGAATTTTTAATTGTCATGGTATGGGAGGCAATCAG
Seq C2 exon
GTTTTCTCTTACACTGCCAACAAAGAAATTAGAACAGATGACCTTTGTTTGGACGTTTCCAAACTTAATGGCCCAGTTACCATGCTCAAATGCCACCACCTAAAAGGCAACCAGCTCTGGGAGTATGACCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016207_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
A:
PF0065217=Ricin_B_lectin=FE(26.9=100)
C2:
PF0065217=Ricin_B_lectin=FE(37.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAAGCCTTTCTCTTGGT
R:
TTTGAGCATGGTAACTGGGCC
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]