GgaEX1025963 @ galGal4
Exon Skipping
Gene
ENSGALG00000013135 | GALNT1
Description
polypeptide N-acetylgalactosaminyltransferase 1 [Source:RefSeq peptide;Acc:NP_001006381]
Coordinates
chr2:83821493-83823772:-
Coord C1 exon
chr2:83823633-83823772
Coord A exon
chr2:83822413-83822511
Coord C2 exon
chr2:83821493-83821627
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTTTCTCACTCCCAGATA
3' ss Score
10.16
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GAGTTACTAAAGTTGACTATGGGGACATATCATCACGACTTGGATTGAGACGCAAGCTTCAGTGTAAGCCTTTCTCCTGGTACCTGGAGAATGTTTATCCTGATTCCCAAATTCCACGCCATTATTTTTCTTTGGGGGAG
Seq A exon
ATAAGAAACGTGGAAACAAATCAATGTCTGGATAACATGGCAAGAAAAGAAAATGAAAAAGTTGGGATCTTTAACTGCCACGGAATGGGTGGAAATCAG
Seq C2 exon
GTTTTCTCATATACAGCCAACAAAGAAATTCGAACAGATGATTTGTGTTTAGATGTCTCCAAACTTAATGGCCCGGTAACAATGCTCAAGTGCCACCATCTAAAAGGAAATCAGCTTTGGGAATATGATCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013135-'38-30,'38-29,39-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
A:
PF0065217=Ricin_B_lectin=FE(26.9=100)
C2:
PF0065217=Ricin_B_lectin=FE(37.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTCTCCTGGTACCTGGA
R:
TGGTGGCACTTGAGCATTGTT
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]