DreEX6034932 @ danRer10
Exon Skipping
Gene
ENSDARG00000099227 | galnt13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:ZFIN;Acc:ZDB-GENE-091204-444]
Coordinates
chr9:4599262-4600329:-
Coord C1 exon
chr9:4600190-4600329
Coord A exon
chr9:4599791-4599889
Coord C2 exon
chr9:4599262-4599396
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATTACTCTTCTTTATATTAGATC
3' ss Score
7.14
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGTGGTTCGGGTAGATTATGGGGATGTTTCTTCTCGGAAGGCTTTGAGAGAATCTCTGAAGTGCAAACCATTCTCATGGTACCTGGAGAACGTATACCCCGATTCTCAGATTCCCCGCAGATATTACTCCCTCGGGGAG
Seq A exon
ATCAGGAATGTTGAGACCAATCAGTGTGTTGATAACATGGGCCGTAAGGAGAATGAAAAGGTTGGCTTCTTCAACTGTCATGGAATGGGAGGAAACCAG
Seq C2 exon
GTATTTTCATACACTGCTGACAAAGAAATCCGTACGGATGACCTGTGTCTGGATGCATCACGACTGAATGGACCTGTTGTTATGCTGAAGTGCCACCACATGAAGGGAAACCAGATGTTTGAATATGATGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099227-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(2.3=6.4)
A:
PF0065217=Ricin_B_lectin=FE(24.6=100)
C2:
PF0065217=Ricin_B_lectin=FE(33.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAGAACGTATACCCCG
R:
TTTCCCTTCATGTGGTGGCAC
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]