GgaEX1025963 @ galGal3
Exon Skipping
Gene
ENSGALG00000013135 | Q5ZJL1_CHICK
Description
NA
Coordinates
chr2:86085290-86087569:-
Coord C1 exon
chr2:86087430-86087569
Coord A exon
chr2:86086210-86086308
Coord C2 exon
chr2:86085290-86085424
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTTTCTCACTCCCAGATA
3' ss Score
10.16
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GAGTTACTAAAGTTGACTATGGGGACATATCATCACGACTTGGATTGAGACGCAAGCTTCAGTGTAAGCCTTTCTCCTGGTACCTGGAGAATGTTTATCCTGATTCCCAAATTCCACGCCATTATTTTTCTTTGGGGGAG
Seq A exon
ATAAGAAACGTGGAAACAAATCAATGTCTGGATAACATGGCAAGAAAAGAAAATGAAAAAGTTGGGATCTTTAACTGCCACGGAATGGGTGGAAATCAG
Seq C2 exon
GTTTTCTCATATACAGCCAACAAAGAAATTCGAACAGATGATTTGTGTTTAGATGTCTCCAAACTTAATGGCCCGGTAACAATGCTCAAGTGCCACCATCTAAAAGGAAATCAGCTTTGGGAATATGATCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013135-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
A:
PF0065217=Ricin_B_lectin=FE(26.9=100)
C2:
PF0065217=Ricin_B_lectin=FE(37.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTCTCCTGGTACCTGGA
R:
TGGTGGCACTTGAGCATTGTT
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]