DmeEX6004869 @ dm6
Exon Skipping
Gene
FBgn0031681 | pgant5
Description
The gene Polypeptide N-Acetylgalactosaminyltransferase 5 is referred to in FlyBase by the symbol DmelPgant5 (CG31651, FBgn0031681). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 2L:5072170..5093592. Its molecular function is described by: polypeptide N-acetylgalactosaminyltransferase activity. It is involved in the biological process described with: oligosaccharide biosynthetic process. 17 alleles are reported. The phenotypes of these alleles manifest in: embryonic/larval copper cell; embryonic/larval gut. The phenotypic classes of alleles include: viable; lethal; partially lethal - majority die. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during late pupal stages.
Coordinates
chr2L:5072170-5074529:-
Coord C1 exon
chr2L:5074390-5074529
Coord A exon
chr2L:5074092-5074325
Coord C2 exon
chr2L:5072170-5074029
Length
234 bp
Sequences
Splice sites
3' ss Seq
TAACTGAAATTCTTTAATAGATC
3' ss Score
5.7
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
GAGCTCGAAAGGCATCGGCTGGCGATGTGAGCGATCGTAAAGCTCTGCGAGATCGCCTCAAATGCAAGAGTTTCCGCTGGTATCTGGAGAACGTTTATCCCGAGAGTTTAATGCCCTTGGATTACTACTATCTGGGCGAG
Seq A exon
ATCCGAAATGCGGAAACGGAAACCTGCCTGGACACGATGGGCAGGAAGTACAACGAGAAGGTGGGCATTAGCTATTGCCACGGCCTGGGCGGCAATCAGGTGTTCGCCTACACCAAGCGCCAGCAGATCATGTCCGACGATCTGTGCCTGGACGCATCCAGCTCCAATGGCCCGGTCAACATGGTGCGATGCCACAACATGGGCGGCAATCAGGAGTGGGTTTACGATGCGGAG
Seq C2 exon
GAGAAGTGGATTCGGCACACGAACACGGGTCAGTGCTTACAGCGTGCCACGCGGGACGATGCCAATACGCCGCTGCTGCGTCCCTGCAGCTACGGAAAGGGCCAGCAGTGGCTAATGGAGTCCAAGTTCAAGTGGCAGGCTCACTAGCTGGATGGCAACGACGCCGGAACGCCCGACAACAACTAAATACAACTCAACTCAACGGATCCTACTAACTATACTGAGAACTTCCAATTTATGTTTAATCCTAGCCGGCTCCTGTTTTCGACGTTTATGTAGCCTAAGTTCAAGCGGATTCAATATCCCTCTCTCTCTCTCTATCTTTGTGTGCGTGAATGTGTGTAGGCGGCCGGAGGAGTCCTTCGGCAGCAGGATGTCTTCCCAAAATCTTGATGCGCGTGTGTGAATGTATAGATCTGTTTACATGATGTGCATGTATATGTGTTTATATAGGCAGGCAATTCTACGATTTACCTAGGTATACTATGTAATTGTAATGT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0031681-'18-15,'18-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF071836=DUF1403=PD(33.3=46.8),PF0065217=Ricin_B_lectin=PU(1.7=4.3)
A:
PF0065217=Ricin_B_lectin=FE(65.3=100)
C2:
PF0065217=Ricin_B_lectin=PD(30.5=73.5)
Main Inclusion Isoform:
FBpp0078663
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0110323
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGATGTGAGCGATCGTAAA
R:
TTAGTTGTTGTCGGGCGTTCC
Band lengths:
306-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)