RnoEX0037591 @ rn6
Exon Skipping
Gene
ENSRNOG00000005335 | Galnt13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:RGD Symbol;Acc:735044]
Coordinates
chr3:40568690-40610927:+
Coord C1 exon
chr3:40568690-40568829
Coord A exon
chr3:40579347-40579445
Coord C2 exon
chr3:40610793-40610927
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTGTGTTCCTTTTAGATA
3' ss Score
11
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTGTTGTCAAAGTGGATTATGGAGATGTGTCAGTGAGAAAAACACTAAGGGAAAATCTGAAGTGTAAGCCTTTTTCTTGGTACCTAGAAAACATCTATCCGGACTCCCAGATCCCAAGACGTTATTACTCACTTGGTGAG
Seq A exon
ATACGAAATGTTGAAACCAATCAATGCCTAGACAACATGGGCCGCAAAGAAAATGAAAAAGTGGGTATCTTCAACTGCCATGGCATGGGAGGTAACCAG
Seq C2 exon
GTGTTTTCTTACACTGCTGACAAAGAAATCCGAACTGATGACTTGTGCCTGGATGTATCCAGACTCAGTGGGCCTGTAATCATGTTAAAATGCCACCACATGAGAGGGAATCAGCTGTGGGAGTATGATGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005335-'13-24,'13-21,16-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
A:
PF0065217=Ricin_B_lectin=FE(26.9=100)
C2:
PF0065217=Ricin_B_lectin=FE(37.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCCGGACTCCCAGATCCC
R:
TCCCACAGCTGATTCCCTCTC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]