BtaEX0015288 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005562 | GALNT13
Description
Bos taurus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) (GALNT13), mRNA. [Source:RefSeq mRNA;Acc:NM_001076886]
Coordinates
chr2:41805965-41854028:-
Coord C1 exon
chr2:41853889-41854028
Coord A exon
chr2:41840048-41840146
Coord C2 exon
chr2:41805965-41806099
Length
99 bp
Sequences
Splice sites
3' ss Seq
CATTTTTGTGTTTCCTTTAGATA
3' ss Score
10.52
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTGTTGTCAAAGTGGATTACGGAGATGTGTCAGTCAGAAAAACACTAAGAGAAAATCTGAAGTGTAAGCCCTTTTCTTGGTACCTTGAAAACATCTATCCGGACTCCCAGATCCCAAGACGTTATTACTCACTTGGAGAG
Seq A exon
ATAAGAAATGTTGAAACAAATCAATGTTTAGACAACATGGGCCGCAAGGAAAATGAAAAAGTGGGTATATTCAACTGTCATGGTATGGGAGGAAATCAG
Seq C2 exon
GTATTTTCTTATACTGCTGACAAAGAAATCCGAACCGATGACTTGTGCTTAGATGTTTCTAGACTCAATGGACCTGTAATCATGTTAAAATGCCACCATATGAGAGGAAATCAGTTATGGGAGTATGATGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005562_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
A:
PF0065217=Ricin_B_lectin=FE(26.9=100)
C2:
PF0065217=Ricin_B_lectin=FE(37.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGATGTGTCAGTCAGAA
R:
GCACAAGTCATCGGTTCGGAT
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development