MmuEX6101373 @ mm10
Exon Skipping
Gene
ENSMUSG00000060988 | Galnt13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:MGI Symbol;Acc:MGI:2139447]
Coordinates
chr2:55060465-55098697:+
Coord C1 exon
chr2:55060465-55060604
Coord A exon
chr2:55073898-55073996
Coord C2 exon
chr2:55098563-55098697
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTGTTCTTTTTAGATA
3' ss Score
11.42
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTGTTGTCAAAGTGGATTATGGAGATGTGTCAGTCAGAAAAACACTGAGGGAAAATCTGAAGTGTAAGCCTTTTTCTTGGTACCTGGAAAACATCTATCCGGACTCCCAGATCCCAAGACGTTATTACTCACTTGGTGAG
Seq A exon
ATACGAAATGTTGAGACCAATCAATGCTTAGATAACATGGGCCGCAAAGAAAATGAAAAAGTGGGTATCTTCAACTGTCACGGCATGGGAGGTAACCAG
Seq C2 exon
GTGTTTTCTTATACTGCTGACAAAGAAATCCGAACTGACGACTTGTGCCTGGATGTATCCAGACTCAGTGGCCCTGTAATCATGCTAAAATGCCACCACATGAGAGGAAATCAGCTGTGGGAATATGACGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060988_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
A:
PF0065217=Ricin_B_lectin=PD(88.1=53.6),PF0065217=Ricin_B_lectin=PU(29.1=49.3)
C2:
PF0065217=Ricin_B_lectin=FE(37.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCCGGACTCCCAGATCCC
R:
AGCGTCATATTCCCACAGCTG
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types