GgaEX6043338 @ galGal4
Exon Skipping
Gene
ENSGALG00000012536 | GALNT13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:HGNC Symbol;Acc:HGNC:23242]
Coordinates
chr7:35212785-35218532:+
Coord C1 exon
chr7:35212785-35212924
Coord A exon
chr7:35214872-35214970
Coord C2 exon
chr7:35218398-35218532
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCATCTTTTTCTTTCTTCAGATC
3' ss Score
11.83
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTGTTGTGAAGGTGGATTATGGAGATGTGTCAGCCAGGAAGGCGCTGAGAGAAGCCCTGAAGTGCAAACCCTTCTCGTGGTACCTGGAGAACATCTACCCCGACTCGCAGATCCCGCGGCGCTACTACTCGCTGGGAGAG
Seq A exon
ATCAGGAACGTTGACACCAACCAGTGTTTGGACAACATGGGCCGCAAGGAAAACGAGAAAGTGGGCATCTTCAACTGCCACGGCATGGGAGGGAACCAG
Seq C2 exon
GTGTTTTCCTACACGGCAGACAAGGAGATCCGCACGGATGATCTGTGCCTGGACGTGTCGCGGCTGAACGGCCCGGTGACCATGCTCAAGTGCCACCACATGCGGGGAAACCAGCTCTGGGAGTACGATGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012536-'23-19,'23-17,24-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
A:
PF0065217=Ricin_B_lectin=FE(26.9=100)
C2:
PF0065217=Ricin_B_lectin=FE(37.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGATGTGTCAGCCAGGA
R:
CACGTCCAGGCACAGATCATC
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]