MmuEX6101373 @ mm9
Exon Skipping
Gene
ENSMUSG00000060988 | Galnt13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:MGI Symbol;Acc:MGI:2139447]
Coordinates
chr2:54912876-54951108:+
Coord C1 exon
chr2:54912876-54913015
Coord A exon
chr2:54926309-54926407
Coord C2 exon
chr2:54950974-54951108
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTGTTCTTTTTAGATA
3' ss Score
11.42
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTGTTGTCAAAGTGGATTATGGAGATGTGTCAGTCAGAAAAACACTGAGGGAAAATCTGAAGTGTAAGCCTTTTTCTTGGTACCTGGAAAACATCTATCCGGACTCCCAGATCCCAAGACGTTATTACTCACTTGGTGAG
Seq A exon
ATACGAAATGTTGAGACCAATCAATGCTTAGATAACATGGGCCGCAAAGAAAATGAAAAAGTGGGTATCTTCAACTGTCACGGCATGGGAGGTAACCAG
Seq C2 exon
GTGTTTTCTTATACTGCTGACAAAGAAATCCGAACTGACGACTTGTGCCTGGATGTATCCAGACTCAGTGGCCCTGTAATCATGCTAAAATGCCACCACATGAGAGGAAATCAGCTGTGGGAATATGACGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060988-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
A:
PF0065217=Ricin_B_lectin=FE(26.9=100)
C2:
PF0065217=Ricin_B_lectin=FE(37.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCCGGACTCCCAGATCCC
R:
AGCGTCATATTCCCACAGCTG
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: