MmuEX0019988 @ mm10
Exon Skipping
Gene
ENSMUSG00000000420 | Galnt1
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:MGI Symbol;Acc:MGI:894693]
Coordinates
chr18:24272662-24282236:+
Coord C1 exon
chr18:24272662-24272801
Coord A exon
chr18:24279944-24280042
Coord C2 exon
chr18:24282102-24282236
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTCATTGCCCCACAGATA
3' ss Score
9.81
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGTTACAAAGGTAGATTATGGAGATATATCATCAAGACTTGGCCTAAGACGTAAACTACAATGCAAACCTTTCTCTTGGTACCTAGAAAATATTTACCCTGATTCTCAAATTCCTCGTCACTATTTCTCATTGGGAGAG
Seq A exon
ATACGAAATGTGGAAACAAATCAGTGTCTAGATAACATGGCTAGAAAAGAGAATGAAAAGGTTGGAATCTTTAATTGTCATGGTATGGGAGGTAATCAG
Seq C2 exon
GTTTTCTCCTACACTGCCAACAAAGAAATTAGAACAGACGACCTTTGTTTGGACGTTTCCAAACTTAATGGCCCAGTCACCATGCTCAAATGCCACCACCTAAAAGGCAACCAGCTCTGGGAGTATGACCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000420_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
A:
PF0065217=Ricin_B_lectin=FE(26.9=100)
C2:
PF0065217=Ricin_B_lectin=FE(37.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAACCTTTCTCTTGGTACCT
R:
ATTTGAGCATGGTGACTGGGC
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types