DreEX0035813 @ danRer10
Exon Skipping
Gene
ENSDARG00000090804 | gpr155a
Description
G protein-coupled receptor 155a [Source:ZFIN;Acc:ZDB-GENE-100922-89]
Coordinates
chr9:2482753-2488878:+
Coord C1 exon
chr9:2482753-2482921
Coord A exon
chr9:2486605-2486760
Coord C2 exon
chr9:2488795-2488878
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTGCTGTTTTTCTGTGTCAGGTG
3' ss Score
10.44
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GCTGATGATGCCTCTGATCTGCAGAGGGATGGTGGAAGTTTTGGACAATACAAACAGAAGTACGCTGAACCACACCAGTCTGTCAAACTACGCCTTTCTGTACGGAGTCTTTCCCACCGCACCCAGTGTGGCCATTTATGCAGCTCATTACAACATGGAGCTGGAGGTG
Seq A exon
GTGACCTCAGGTATGGTGGTCAGCACGTTTCTGTCCGCCCCCATCATGTACGTGTCTGCGTGGTTGTTGACCATCCCGTGGATGGATTCAGCTCCGCTGGCCTCTGCTCTGCAGAACGTCAGCTTCGACATCAGCATTATCAGCCTCTTCGCACTG
Seq C2 exon
GTGTGGAGTCTCACAGTCATGATACTGAGCCGAAAATACCACAGGATTCCTCATATTTTCACCATAAACCTCTTTGTGGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090804-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=FE(32.9=100)
A:
PF0354713=Mem_trans=PD(11.2=36.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGATGCCTCTGATCTGC
R:
GCGCCACAAAGAGGTTTATGG
Band lengths:
251-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]