HsaEX6016793 @ hg19
Exon Skipping
Gene
ENSG00000163328 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:22951]
Coordinates
chr2:175331272-175335283:-
Coord C1 exon
chr2:175335118-175335283
Coord A exon
chr2:175333640-175333795
Coord C2 exon
chr2:175331272-175331355
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTTTGATTTCATTTTTGCAGATA
3' ss Score
9.32
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCTGGTGCTGCCACTTCTGTGCAGAGAAATGGTGGAACTCTTGGACAAGGGCGACAGTGTGGTGAACCATACAAGTTTATCAAATTATGCATTTCTGTATGGTGTATTTCCTGTAGCACCAGGAGTGGCTATCTTTGCAACACAATTCAACATGGAAGTAGAAATT
Seq A exon
ATAACCTCAGGGATGGTGATAAGCACATTTGTGTCTGCTCCCATCATGTACGTTTCTGCCTGGTTACTGACCTTTCCCACTATGGACCCTAAGCCATTGGCATATGCCATCCAGAATGTTAGTTTTGATATAAGTATTGTCAGCCTGATCTCCTTG
Seq C2 exon
ATCTGGTCTCTGGCTATTCTTCTTTTGAGTAAGAAATATAAACAGCTTCCTCATATGCTTACAACTAATTTACTCATTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163328-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=FE(32.0=100)
A:
PF0354713=Mem_trans=PD(11.0=36.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCTGCCACTTCTGTG
R:
AGCAATGAGTAAATTAGTTGTAAGCA
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)