GgaEX1027230 @ galGal4
Exon Skipping
Gene
ENSGALG00000014209 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr7:16385738-16388242:+
Coord C1 exon
chr7:16385738-16385903
Coord A exon
chr7:16387041-16387196
Coord C2 exon
chr7:16388159-16388242
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTGACTCTTTGCAGATT
3' ss Score
9.93
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
ACTTATGATGCCATTTCTCTGTAGAGAAATGGTGGAACTCCTGGACAAGAGCAGCAGCGCAGTCAACCACACCAGTTTATCGAACTATGCATTTCTTTATGGAGTTTTTCCAGCAGCACCTGGCGTTGCAATATTTGCAACTCAATTTAATATGGAAGTAGGAATT
Seq A exon
ATTACCTCAGGCATGGTGATAAGCACTTTTGTGTCTGCACCTATCATGTATGTTTCTGCATGGCTTTTGACCATTCCATCTATGGACCCCAACCCACTGGCATCTGCTCTCCAGAATGTTAGCTTTGACATAAGTATTGTCAGCCTTGTTTCTTTG
Seq C2 exon
ATTTGGTCTCTTATTGTTGTTCTTCTCAGTAAGAAATACAAACAGCTTCCTCATATGATTACAACAAACCTACTTGTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209-'5-6,'5-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=FE(31.6=100)
A:
PF0354713=Mem_trans=PD(10.9=36.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTATGATGCCATTTCTCTGTAGA
R:
GGTTTGTTGTAATCATATGAGGAAGC
Band lengths:
236-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]