RnoEX0039616 @ rn6
Exon Skipping
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60086657-60089436:-
Coord C1 exon
chr3:60089271-60089436
Coord A exon
chr3:60088282-60088437
Coord C2 exon
chr3:60086657-60086740
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATTTGGTCTCACTTTTGCAGATA
3' ss Score
10.75
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCTGGTGCTGCCCCTTCTGTGCAGAGAAATGGTGGAAGTCCTGGACAAGGGTAACAGCGTAGTGAACCACACGAGTCTGTCCAACTATGCGTTTCTCTATGGCGTCTTCCCTGTGGCTCCAGGAGTGGCTATCTTTGCAACACAATTCAACATGGAAGTGGAGATC
Seq A exon
ATAACCTCAGGAATGGTCATAAGTACATTTGTGTCTGCTCCAATCATGTATGTTTCTGCCTGGTTATTGACCTTTCCTACCATGGATGCTAAGCCACTGGCATATGCCATTCAGAATGTTAGCTTTGACATAAGCATTATCAGCCTGGTCTCCTTG
Seq C2 exon
ATCTGGTCTCTGTCTGTTCTTCTCTTGAGTAAGAAGTATAAGCAGCTTCCTCACATGCTCACAGCTAACCTACTCATCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485-'12-9,'12-8,13-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=FE(31.8=100)
A:
PF0354713=Mem_trans=PD(11.0=36.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCTTCTGTGCAGAGAAA
R:
CTGAGCGATGAGTAGGTTAGCTG
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]