DreEX0039240 @ danRer10
Exon Skipping
Gene
ENSDARG00000051836 | im:6904482
Description
im:6904482 [Source:ZFIN;Acc:ZDB-GENE-050506-81]
Coordinates
chr25:24041540-24048575:+
Coord C1 exon
chr25:24041540-24041613
Coord A exon
chr25:24045111-24045196
Coord C2 exon
chr25:24048468-24048575
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTTAGTTGGTTTGGTTACAGGGC
3' ss Score
4.74
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
ATTTTGAGATGAAGAAGGACATCGACACGCTAATAGCAGAAGAACGGGCTGACATCATTGAAAAATATGAGAAG
Seq A exon
GGCAGGCAGGAGGGTGTGCACATTAACCCCTGGGAGGATGGAGACTACAGCATCTTTAAGTTCACAGACCGCTTCGGGTTCCTGCA
Seq C2 exon
ATGATGAAGCGGGTGTACAAGGGGATTCCCTTGAAGCTACGTGGTCAGGCCTGGGCTCTTTTATTAGATGTGGAAAAGGTGAAACAAGCAAACTTCAGGAAGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051836_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(11.9=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGGACATCGACACGC
R:
CTTCCTGAAGTTTGCTTGTTTCACC
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]