BtaEX6063757 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019488 | USP6NL
Description
USP6 N-terminal like [Source:HGNC Symbol;Acc:HGNC:16858]
Coordinates
chr13:12782055-12791738:+
Coord C1 exon
chr13:12782055-12782122
Coord A exon
chr13:12783946-12784028
Coord C2 exon
chr13:12791699-12791738
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTCTTTGTCCCCTTCTATAGGGA
3' ss Score
10.62
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATTCAAACCAGGATGTAGCACTTAAACTTGCCCAGGAGCGAGCCGAAATAGTTGCTAAATATGACAGA
Seq A exon
GGACGAGAAGGTGCAGAGATTGAACCTTGGGAAGATGCTGATTACCTTGTTTACAAAGTCACGGATAGATTTGGCTTCTTACA
Seq C2 exon
TGAGGAGGAGCTCCCATATCACAATGCAGCTATGGAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019488-'3-5,'3-2,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAACCAGGATGTAGCACTT
R:
CCGTTCCATAGCTGCATTGTG
Band lengths:
106-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]