DmeEX6010642 @ dm6

Exon Skipping

Gene

FBgn0020620 | RN-tre

Description

The gene Related to the N terminus of tre oncogene is referred to in FlyBase by the symbol DmelRN-tre (CG8085, FBgn0020620). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (5 unique). Gene sequence location is 2R:13984815..13990707. Its molecular function is described by: Rab GTPase binding; GTPase activator activity. It is involved in the biological process described with: activation of GTPase activity; intracellular protein transport; regulation of GTPase activity. 11 alleles are reported. The phenotypes of these alleles manifest in: organism; multi-tissue structure; head segment; circulatory system; female germline cyst. The phenotypic classes of alleles include: melanotic mass phenotype; planar polarity defective; cell migration defective; neuroanatomy defective; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, in adult female stages.

Coordinates

chr2R:13988943-13990707:-

Coord C1 exon

chr2R:13990566-13990707

Coord A exon

chr2R:13989685-13989986

Coord C2 exon

chr2R:13988943-13989624

Length

302 bp

Sequences

Splice sites

3' ss Seq

CCATTTTTTTTTTATCAAAGTTT

3' ss Score

4.88

5' ss Seq

CAAGTGAGT

5' ss Score

9.1

Exon sequences

Seq C1 exon

CTGGCAACTCTGGCCCTCACACACACTCAGTCGCCCCCCAAATGTATCGGAAACATGCAGCCGAGATAAAATAGTGAAAAACTAGTTACCAAACATAACCGATCAGTGCGGATAATAAGAATTGGCAATTCAAAATTAAATG

Seq A exon

TTTCGCGCTATCGCCCAGTCAGCTCAGAAGCAGCCGCTCCCCAACTGAGAGCACAGAGAAACCAGCTCTGGCCACTTGCTCCTCCGGATCCGGCTCCTGCTCCTGTCCCCGATCCCCTCCCCCACCCGCCAAATCCTGATCCTGCTCCAAATGACTGACGGCGAACAGCAGGAGGCGCTGGTCAAGCGGGCCGAGGACGAGCGCGAGGACATCTTCCGGCGCTACGAACTCGGGCTGGATCCCAGCAATGTGGTGGACTCCTGGGAGAATCCCACCTTCGAGATCTACCACAGGACAGACAA

Seq C2 exon

ATATGGCTTCTTGCACGACTCGCGGCTGCCGTCGACGCGTGATGCCCAGGAGGTGCATCGCAACAAGATTGAAATGGAGCGGGACAAAAAGTGGATGAAGATGCTAAATCAGTGGCCGCCGCCCCAGGATAAGCTGCACAAGCGCGTCTACAAGGGCATACCGGATCGCGTGCGTATGGTGGCCTGGAATAAGCTGCTCGACATCCAGCAATCGATAAACAACAATGCTGGCGTCTACCTCCGAATGCTGCAGCTGGCCAGGAAGTACTCCACGGAGACGCGACAAATCGATGCCGATGTGAATCGTCAGTTTCGCGACAATCTTGCCTTTCGCGAGCGCTACAGCGTAAAGCAGTGCTCGCTATTCAATGTGCTCAACGCCTATAGCATCTACAACTCGGAGCTGGGCTACTGCCAGGGCATGGCCTGTGTGGCTGGCGTGCTGTTGCTTTATTTGCACGAGGAGGAGGCTTTTTGGGCATTAAATACCCTGATAACAG

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0020620-'0-2,'0-1,4-2=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available

Features