GgaEX1001676 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NDV6]
Coordinates
chr5:15427190-15465002:-
Coord C1 exon
chr5:15464933-15465002
Coord A exon
chr5:15427803-15427888
Coord C2 exon
chr5:15427190-15427270
Length
86 bp
Sequences
Splice sites
3' ss Seq
GACCTTCCTTCTGCTTTCAGGGC
3' ss Score
11.88
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GATTTGCCAGCTCCCACATGCCAGTGAGGATCGTGCTCTGGCTCTTCGGAGAAGTCAGCGCTCTGAGCAG
Seq A exon
GGCAGGCAGGAGGGAGCCACGATTGACCCATGGGAAGATGCTGATTTCACACTGTACAAAGTTACTGACCGCTTTGGGTTTCTGCA
Seq C2 exon
CAAAAGCAGCAGGAAATTGAGCGCGTGGACAAGTGGCTGAAGATGCTGAAGAAATGGGGCAAATACAGAAACAGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006897_MULTIEX2-6/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTGCCAGCTCCCACATGC
R:
CTTGTCACTGTTTCTGTATTTGCCC
Band lengths:
151-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]