DreEX0068337 @ danRer10
Exon Skipping
Gene
ENSDARG00000011088 | si:ch211-288d18.1
Description
si:ch211-288d18.1 [Source:ZFIN;Acc:ZDB-GENE-060503-323]
Coordinates
chr7:48747874-48755237:+
Coord C1 exon
chr7:48747874-48747939
Coord A exon
chr7:48751517-48751602
Coord C2 exon
chr7:48755157-48755237
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCATGTGTGTTTCAGGGT
3' ss Score
10.81
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATGAAGAAGGACATAGAGGTGCTGATAGCAGAGGAACGTGCTGAGATCATCTCAAAATATAATAAG
Seq A exon
GGTAGAGACGCAGGAGTTGAGATCGATCCTTGGGAGGATGCAGACTACAGCATATACAGAGTCACAGATCGCTTCGGATTTCTTCA
Seq C2 exon
CAAAAACAGGTCGAGATTGAGAGGGTGCAGAAATGGCTGAAGATGCTAAAAAACTGGAGCAAGTATAGAAACAGTGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011088_MULTIEX1-1/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGGACATAGAGGTGCTGA
R:
CCGGTCACTGTTTCTATACTTGCT
Band lengths:
146-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]