HsaEX6087508 @ hg19
Exon Skipping
Gene
ENSG00000148429 | USP6NL
Description
USP6 N-terminal like [Source:HGNC Symbol;Acc:16858]
Coordinates
chr10:11560534-11569566:-
Coord C1 exon
chr10:11569499-11569566
Coord A exon
chr10:11567385-11567467
Coord C2 exon
chr10:11560534-11560573
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTGCCTTATTTTAGGGA
3' ss Score
11.4
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATTCAGACCAGGATGTAGCACTCAAACTTGCCCAGGAGCGAGCTGAAATAGTTGCTAAATATGACAGA
Seq A exon
GGACGAGAAGGTGCAGAGATTGAACCTTGGGAAGATGCTGATTACCTTGTTTACAAAGTCACAGATAGATTTGGCTTTTTACA
Seq C2 exon
TGAGGAGGAGCTCCCAGATCATAATGTGGCTGTGGAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148429-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACCAGGATGTAGCACTCA
R:
CCGTTCCACAGCCACATTATGA
Band lengths:
106-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)