GgaEX1062737 @ galGal4
Exon Skipping
Gene
ENSGALG00000006706 | USP6NL
Description
USP6 N-terminal-like protein [Source:RefSeq peptide;Acc:NP_001026011]
Coordinates
chr1:5937907-6004911:-
Coord C1 exon
chr1:6004822-6004911
Coord A exon
chr1:5953799-5953881
Coord C2 exon
chr1:5937907-5937946
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTCCTTCCTAATAGGGA
3' ss Score
10.65
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GACATGTATACCTCTGAGAAACCTTCTCCAACAAGATACCTTGCTTCAACACCTGGTTTGGATTACATGCGAAGAAGTTTCCAGTCATGA
Seq A exon
GGACGGGATGGTGCACAGATAGAACCATGGGAAGATGCTGACTATCGCCTGTACAAGGTTACAGATAGATTTGGGTTTCTACA
Seq C2 exon
TCCAGAGGAGCTTCCTGTCCATGATGCAGCAATAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006706_MULTIEX1-2/13=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGTATACCTCTGAGAAACCT
R:
TTCTATTGCTGCATCATGGACAGG
Band lengths:
127-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]