DreEX0040180 @ danRer10
Exon Skipping
Gene
ENSDARG00000012942 | itgb5
Description
integrin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6022]
Coordinates
chr9:22866676-22868826:+
Coord C1 exon
chr9:22866676-22867157
Coord A exon
chr9:22867516-22867601
Coord C2 exon
chr9:22868619-22868826
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACGTACTTTCTGTTTTCTAGGTC
3' ss Score
11.3
5' ss Seq
GAGGTACGC
5' ss Score
9.4
Exon sequences
Seq C1 exon
TGAACTTCCAAGCTGAAAACAACCGGAGGAACGAGGAAAACAGCCTGTTCAATAAGTTTGAAATGTTCGTGCAACTGAAGATTTAAAACCCAGTATGAATGCTGGGCAAGTTGCATTACAGCAGTGGACCTCGGACAGAGAGCGACAGTAACTTCGAGTGTGTGGATTATTGTTACAGGATCACTCGGATTTCACTCATGTGTTTACAGTGCAGATTCGCGCACTGGACACTCACTTCAGTCATGTATGTGCCGCTGTGATTTGGGAAGGATGGACAAAGAGAAGATCTCGGTTACCCGCTGTGTAAAAATCATATATCTATAATAACTTAGTTTTATACTATTGTACAAAAGGAAAACTACGTTTGGCGCTGAACTGTGTTTGGACTTCGCAGGGAAGGATGTGGAAACTTTGCTCATCTACACGCCACCCGGCTCTTCTAGTTTGTATAGTGTTAGAAATATTTATTCACAGCGTCAAAG
Seq A exon
GTCTTAATGTTTGTATGAGCGGCAGCGCCACGTCTTGTGAAGAGTGTCTCCTCATTCACCCGAGCTGCGCCTGGTGCGCGCAAGAG
Seq C2 exon
GACTTTGGACAGGCCAGAACACTTACCTCAAGATGTGACTTTAGCCAGAACTTGCAGAAGAGGGGATGCGATGCACCATTTATAGAGAACCCGAGGAGTGGCAGCTCTGTGCTCCAGAGCAAACCCTTGAGCTACAAAGGGTCAGGAGTGACCCAGTATGATGTCATCCAGATATACCCACAGAAGATCTCTCTCAGCTTAAGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012942_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0143720=PSI=PU(43.5=93.1),PF0036213=Integrin_beta=PU(17.0=58.6)
C2:
PF0143720=PSI=PD(53.2=47.1),PF0036213=Integrin_beta=FE(69.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTCATCTACACGCCACC
R:
GCCACTCCTCGGGTTCTCTAT
Band lengths:
174-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]