DreEX0040353 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21263726-21265250:+
Coord C1 exon
chr8:21263726-21263821
Coord A exon
chr8:21263918-21263956
Coord C2 exon
chr8:21265111-21265250
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATTATTTATTTGCGTTTCAGGAG
3' ss Score
8.01
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTGGTCCACCATGATCCATGTCGAGGAGGAGCCGGACACTGGAACAGCCTCTACAGATTCAAACACCTGGCCACAGGAAACTATCTCGCTGCTGAG
Seq A exon
GAGAACCCAGGTTACAAAGAAAACAGCAATGATATTGAG
Seq C2 exon
GTGGACAGCAGTCGTATCAAGAGAAGCCTTGGAGAAAGGATTAAATATAAGCTAGTCGCAGTGCCTCATGGGAACGACATCGCCTCTCTGTTTGAGCTGGACCCGACAACACTGCAGAAGACTGATTCATTTGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.615 C2=0.014
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(31.6=100)
A:
PF0281514=MIR=PD(11.2=84.6)
C2:
PF0281514=MIR=FE(23.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACAGGAAACTATCTCGC
R:
CAAACAGAGAGGCGATGTCGT
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]