MmuEX6076261 @ mm10
Exon Skipping
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27089262-27089972:+
Coord C1 exon
chr17:27089262-27089357
Coord A exon
chr17:27089616-27089666
Coord C2 exon
chr17:27089830-27089972
Length
51 bp
Sequences
Splice sites
3' ss Seq
CACCTTGTACACCTGTTTAGGAA
3' ss Score
6.88
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GTGGTCCACCACGACCCCTGCCGCGGGGGAGCCGGACACTGGAACGGTCTGTACAGGTTCAAGCACCTGGCCACGGGCAACTATCTGGCCGCTGAG
Seq A exon
GAAAACCCCAGCTACAAGGGTGATGTCTCAGATCCTAAGGCAGCTGGACTG
Seq C2 exon
GGGGCCCAGGGCCGCACTGGCCGCAGGAACGCAGGCGAGAAGATCAAGTACCGTCTGGTGGCTGTGCCACATGGGAATGACATCGCGTCTCTCTTCGAGCTGGACCCCACCACGCTGCAGAAAACCGACTCCTTCGTGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-'19-18,'19-11,20-18=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.765 C2=0.146
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.5=100)
A:
PF0281514=MIR=FE(8.0=100)
C2:
PF0281514=MIR=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTCTGTACAGGTTCAAGC
R:
CGATGTCATTCCCATGTGGCA
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types