HsaEX6046713 @ hg38
Exon Skipping
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33662911-33663880:+
Coord C1 exon
chr6:33662911-33663006
Coord A exon
chr6:33663503-33663550
Coord C2 exon
chr6:33663738-33663880
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTTGTATCTCTGTCCAGGAGAAC
3' ss Score
-10.88
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTGGTCCACCACGACCCCTGCCGTGGAGGAGCTGGGCACTGGAATGGCTTGTACCGCTTCAAGCACCTGGCTACAGGCAACTACCTGGCTGCTGAG
Seq A exon
AACCCCAGTTACAAAGGTGATGCCTCAGATCCCAAGGCAGCAGGAATG
Seq C2 exon
GGGGCACAGGGCCGCACAGGCCGCAGGAATGCTGGGGAGAAGATCAAGTACTGCCTGGTGGCTGTGCCTCATGGCAATGACATCGCCTCTCTCTTTGAGCTGGACCCCACCACCTTGCAGAAAACCGACTCTTTCGTGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-'32-37,'32-36,33-37
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.882 C2=0.146
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.5=100)
A:
PF0281514=MIR=FE(8.0=100)
C2:
PF0281514=MIR=FE(23.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTACCGCTTCAAGCACCT
R:
AGAGAGAGGCGATGTCATTGC
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains