HsaEX6046713 @ hg19
Exon Skipping
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:6182]
Coordinates
chr6:33630688-33631657:+
Coord C1 exon
chr6:33630688-33630783
Coord A exon
chr6:33631277-33631327
Coord C2 exon
chr6:33631515-33631657
Length
51 bp
Sequences
Splice sites
3' ss Seq
CATCTTGTATCTCTGTCCAGGAG
3' ss Score
8.52
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTGGTCCACCACGACCCCTGCCGTGGAGGAGCTGGGCACTGGAATGGCTTGTACCGCTTCAAGCACCTGGCTACAGGCAACTACCTGGCTGCTGAG
Seq A exon
GAGAACCCCAGTTACAAAGGTGATGCCTCAGATCCCAAGGCAGCAGGAATG
Seq C2 exon
GGGGCACAGGGCCGCACAGGCCGCAGGAATGCTGGGGAGAAGATCAAGTACTGCCTGGTGGCTGTGCCTCATGGCAATGACATCGCCTCTCTCTTTGAGCTGGACCCCACCACCTTGCAGAAAACCGACTCTTTCGTGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.882 C2=0.146
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.5=100)
A:
PF0281514=MIR=FE(8.0=100)
C2:
PF0281514=MIR=FE(23.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTACCGCTTCAAGCACCT
R:
AGAGAGAGGCGATGTCATTGC
Band lengths:
143-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)