RnoEX0045429 @ rn6
Exon Skipping
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5678006-5678718:+
Coord C1 exon
chr20:5678006-5678101
Coord A exon
chr20:5678335-5678385
Coord C2 exon
chr20:5678576-5678718
Length
51 bp
Sequences
Splice sites
3' ss Seq
CACTTTGTACGTCTCTTTAGGAA
3' ss Score
9.9
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
Exon sequences
Seq C1 exon
GTGGTCCACCATGACCCCTGCCGCGGCGGAGCGGGACACTGGAATGGTCTGTACAGGTTCAAGCACCTGGCCACGGGCAACTATCTGGCGGCTGAA
Seq A exon
GAAAACCCCAGCTACAAGGGTGATGTCTCAGATCCTAAGGCAGCAGGACCA
Seq C2 exon
GGGGCCCAGAGCCGCACAGGCCGCAGAAACGCCGGCGAGAAGATCAAGTACCGTCTGGTGGCTGTGCCACATGGCAACGACATCGCGTCTCTCTTCGAGCTGGACCCCACCACGCTGCAGAAAACCGACTCCTTCGTGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795-'10-11,'10-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.824 C2=0.229
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.5=100)
A:
PF0281514=MIR=FE(8.0=100)
C2:
PF0281514=MIR=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCGGGACACTGGAATG
R:
AGCCACCAGACGGTACTTGAT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]