BtaEX6097009 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7721196-7722233:+
Coord C1 exon
chr23:7721196-7721291
Coord A exon
chr23:7721848-7721898
Coord C2 exon
chr23:7722091-7722233
Length
51 bp
Sequences
Splice sites
3' ss Seq
CATCTTGAATCTCTGAGCAGGAG
3' ss Score
4.77
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GTGGTCCACCACGACCCGTGCCGTGGAGGAGCTGGCCACTGGAACGGCCTCTACCGCTTCAAGCACCTGGCCACCGGCAACTACCTGGCTGCTGAG
Seq A exon
GAGAACCCCAGCTACAAGGGTGATGCCTCTGATCCCAAGGCAGCAGGCACG
Seq C2 exon
GGTGCGCAGGGCCGCACAGGTCGCCGGAACGCTGGGGAGAAGATCAAGTACCGCCTGGTGGCTGTGCCCCACGGCAACGACATCGCTTCCCTCTTCGAGCTGGACCCCACCACGCTGCAGAAGACCGACTCCTTCGTGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.941 C2=0.208
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.5=100)
A:
PF0281514=MIR=FE(8.0=100)
C2:
PF0281514=MIR=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACCGCTTCAAGCACCTG
R:
AAGAGGGAAGCGATGTCGTTG
Band lengths:
143-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]