GgaEX0004091 @ galGal4
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4582875-4584862:-
Coord C1 exon
chr26:4584767-4584862
Coord A exon
chr26:4583574-4583624
Coord C2 exon
chr26:4582875-4583017
Length
51 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCTTTAACTTTTCAGGAA
3' ss Score
11
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GTGGTTCACCACGACCCGTGCCGAGGGGGGGCTGGGCACTGGAATGGCTTGTACCGCTTCAAGCACCTCGCCACAGGCAACTACCTGGCAGCAGAG
Seq A exon
GAAAACCCAAGTTATAAAGGAGACGTGGCTGAGCCCAAAGCAGCGCCCACG
Seq C2 exon
GGGGGGAGCAGCCGCTCCAGCCGCAGGAACACCGGGGAGAAGATCAAGTACCGGCTGGTGGCCGTGCCTCACGGGAACGACATCGCCTCCCTCTTCGAGCTGGACCCCACCACGCTGCAGAAGACGGATTCCTTCGTCCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.824 C2=0.229
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.5=100)
A:
PF0281514=MIR=FE(8.0=100)
C2:
PF0281514=MIR=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTACCGCTTCAAGCACCT
R:
AAGAGGGAGGCGATGTCGTTC
Band lengths:
144-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]