DreEX0040624 @ danRer10
Exon Skipping
Gene
ENSDARG00000070787 | jupa
Description
junction plakoglobin a [Source:ZFIN;Acc:ZDB-GENE-991207-22]
Coordinates
chr11:11735954-11769742:+
Coord C1 exon
chr11:11735954-11736074
Coord A exon
chr11:11767385-11767439
Coord C2 exon
chr11:11769575-11769742
Length
55 bp
Sequences
Splice sites
3' ss Seq
GCTTTTGTTTTGTTTTGTAGGTT
3' ss Score
10.99
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATTGTTCAGCCTCATCTGAATGCAGGAGAAAGTGTCGCACTCCCTGGAACTCTGCTGTGGGGAAAACTAAAAGAGTCTTGGATCGCTGTCAGCAGCAGTGTTTGGAGACGAGTGTTTAAAG
Seq A exon
GTTTTACTTTTGGACTGTTCGGTTTGAGTCCAGGAGGCCAAAATGGAAATGCACA
Seq C2 exon
TGGGAGAGGCTCCAGGTTCGGTGAAGGTCACAGAGTGGCAGCAGTCGTACTACGGCACAGATTCAGGCATCCATTCAGGAGCCACTACTGTTCGCTCAGATGATGATGGAACAGAGTACAGCTCTAAGAAATTCACCTACACCACCACATTCACAGAGAACCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070787-'0-3,'0-2,7-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.702
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGCAGCAGTGTTTGGAG
R:
TCTGAGCGAACAGTAGTGGCT
Band lengths:
135-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]