DreEX0040867 @ danRer10
Exon Skipping
Gene
ENSDARG00000024167 | kcnh1a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1a [Source:ZFIN;Acc:ZDB-GENE-061226-1]
Coordinates
chr17:25664156-25667246:+
Coord C1 exon
chr17:25664156-25664279
Coord A exon
chr17:25666807-25666913
Coord C2 exon
chr17:25667118-25667246
Length
107 bp
Sequences
Splice sites
3' ss Seq
GTTTGTCTTTTCTCTCTCAGCTT
3' ss Score
9.47
5' ss Seq
ACAGTGAGG
5' ss Score
3.44
Exon sequences
Seq C1 exon
ACACGAACTTTGTGTTGGGGAATGCTCAGATCGTAGACTGGCCCATCGTTTACAGCAATGATGGCTTTTGTAAGCTCTCCGGCTACCACCGTGCTGAAGTCATGCAGAAAAGCAGCACTTGCAG
Seq A exon
CTTCATGTATGGAGAGCTCACAGACAAGGACACAAGTGAAAAAGTTCGACTAACCTTCGAAAACTATGAGATGAACTCGTTTGAGATCTTGATGTACAAGAAAAACA
Seq C2 exon
GAACGCCGGTATGGTTTTTTGTGAAAATAGCCCCTATACGAAACGAACAGGAGAAGGTCGTACTCTTCCTGTGTACGTTTAGTGACATCACAGCATTCAAGCAACCAATAGAAGATGACTCCTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024167-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(35.8=90.5)
A:
PF134261=PAS_9=FE(34.0=100)
C2:
PF134261=PAS_9=PD(29.2=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGAACTTTGTGTTGGGGA
R:
AGGAGTCATCTTCTATTGGTTGCT
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]