DreEX0040869 @ danRer10
Exon Skipping
Gene
ENSDARG00000024167 | kcnh1a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1a [Source:ZFIN;Acc:ZDB-GENE-061226-1]
Coordinates
chr17:25686538-25720229:+
Coord C1 exon
chr17:25686538-25686967
Coord A exon
chr17:25715048-25715247
Coord C2 exon
chr17:25719977-25720229
Length
200 bp
Sequences
Splice sites
3' ss Seq
CCTGTTACTTTCTCCTACAGCTC
3' ss Score
11.34
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
GGTATTAGTAGTTTGTTTAGTTCGCTGAAAGTGGTTCGGCTCTTGCGTCTTGGCCGAGTGGCTCGCAAACTGGATCACTACATCGAGTATGGAGCGGCGGTTTTGGTTCTGCTGGTTTGTGTGTTTGGGTTGGCGGCCCATTGGCTGGCCTGCATCTGGTACAGCATTGGAGACTATGAGGTCATTGATGAGGATCGTAACACAGTGCGTACGGACAGCTGGCTTTATATGCTTGCTGAGAGCATCGGGACACCCTACCGCTTCAATGCAAGCGGGACGGGAAGATGGGAAGGTGGACCCACTAAAGATACAGTCTACATCACGTCTCTGTACTTCACCATGACCAGCCTGACCAGTATTGGCTTTGGGAACATCGCTCCAACCACAGATGGGGAGAAGATCTTCGCCGTGGCCATGATGATGATCGGAT
Seq A exon
CTCTCCTATATGCCACCATCTTTGGTAACGTGACGACAATCTTCCAGCAAATGTACGCCAACACCAACCGCTATCATGAGATGCTGAACAGCGTGCGGGATTTCCTCAAACTCTACCAGGTGCCCAAAGGCCTGAGCGAGAGGGTTATGGATTACATTGCCTCCACCTGGTCAATGTCCCATGGCATCGATACGGAAAAG
Seq C2 exon
GTTCTGCAGATCTGTCCCAAAGACATGCGAGCTGATATCTGCGTGCACCTGAACAGGAAGGTCTTCAAGGAACATCCTGCTTTTCGATTGGCCAGTGACGGGTGTTTGCGGGCTCTGGCCATGGAGTTTCAGACCATCCACTGCGCACCGGGGGATCTTATCTACCATGCGGGCGAAAGTGTGGACAGCCTCTGTTTTGTGGTGTCAGGGTCACTAGAGGTCATTCAAGATGATGAGGTGGTCGCCATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024167-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(65.0=100)
A:
PF0052026=Ion_trans=PD(4.5=14.9)
C2:
PF078836=Cupin_2=PU(85.1=47.1),PF0002724=cNMP_binding=PU(45.5=47.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCATGACCAGCCTGAC
R:
CAGAGGCTGTCCACACTTTCG
Band lengths:
292-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]