DreEX0040870 @ danRer10
Exon Skipping
Gene
ENSDARG00000024167 | kcnh1a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1a [Source:ZFIN;Acc:ZDB-GENE-061226-1]
Coordinates
chr17:25659067-25664279:+
Coord C1 exon
chr17:25659067-25659179
Coord A exon
chr17:25660152-25660178
Coord C2 exon
chr17:25664156-25664279
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTCTTTAACTTCCAGTTT
3' ss Score
9.79
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GACCGGTCCGGGCTCTCAGTGGAGCGCATGACCCGCCGTGATGGCCGGGGGACGCAGAGGACTAGTGGCTCCTCAGAACACTTTTCTGGAAAATATTGTCCGACGGTCTAACG
Seq A exon
TTTGGACATTATCACATAGACACACAG
Seq C2 exon
ACACGAACTTTGTGTTGGGGAATGCTCAGATCGTAGACTGGCCCATCGTTTACAGCAATGATGGCTTTTGTAAGCTCTCCGGCTACCACCGTGCTGAAGTCATGCAGAAAAGCAGCACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024167_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134261=PAS_9=PU(35.8=90.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGACTAGTGGCTCCTC
R:
TTGCTGTAAACGATGGGCCAG
Band lengths:
118-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]