DreEX0040872 @ danRer10
Exon Skipping
Gene
ENSDARG00000023236 | kcnh1b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1b [Source:ZFIN;Acc:ZDB-GENE-121128-4]
Coordinates
chr22:37949238-37953973:+
Coord C1 exon
chr22:37949238-37949310
Coord A exon
chr22:37950788-37950814
Coord C2 exon
chr22:37953850-37953973
Length
27 bp
Sequences
Splice sites
3' ss Seq
TGCTCCTTTCAACTTTTCAGTTT
3' ss Score
7.97
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
ATGGCGGGGGGACGCAGAGGACTGGTGGCCCCTCAGAACACATTCCTGGAGAATATAGTGCGGCGCTCCAACG
Seq A exon
TTTGGACATTTTCTCATAGACAGACAG
Seq C2 exon
ACACCAATTTTGTTTTGGGGAACGCCCAGATTGTGGACTGGCCGATCGTCTACAGTAATGACGGATTCTGCAAGCTGTCCGGTTACCATCGTGCTGAAGTCATGCAGAAGAGCAGCACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023236-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134261=PAS_9=PU(35.8=90.5)
Main Inclusion Isoform:
ENSDART00000032246fB3397
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTCAGAACACATTCCTG
R:
GACAGCTTGCAGAATCCGTCA
Band lengths:
125-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]