DreEX0041037 @ danRer10
Exon Skipping
Gene
ENSDARG00000075812 | kcnt2
Description
potassium channel, subfamily T, member 2 [Source:ZFIN;Acc:ZDB-GENE-130530-783]
Coordinates
chr2:12244375-12247609:-
Coord C1 exon
chr2:12247508-12247609
Coord A exon
chr2:12244922-12245005
Coord C2 exon
chr2:12244375-12244503
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTTCTGTTGTTGCAGTCT
3' ss Score
6.95
5' ss Seq
GCCGTAAGA
5' ss Score
5.75
Exon sequences
Seq C1 exon
AAAGAAAGAGAAAAAGGCTCAAACCTGTCCTTCATATTTCACCTTCCGTTTGCTGCTGGTAGGGTTTTCAGCATCAGCATGCTAGACACACTCCTCTACCAG
Seq A exon
TCTTTTGTTAAAGATTATATGATAACAATCACCAGGCTCCTGCTGGGGTTGGAAACTACACCACAGTCTGGTTTCCTGTGTGCC
Seq C2 exon
ATGAGCATCACCGAGGAGGACCTATGCATTGAGACATATGGCAGGCTGTACCAAAGGCTTTCCTCCACTGTAGGAGATATTCCCATCGGCATCTACAGGACCAAGTCTCAAACAGTTGAATCCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075812_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACCTTCCGTTTGCTGCT
R:
ACTTGGTCCTGTAGATGCCGA
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]