DreEX0042945 @ danRer10
Exon Skipping
Gene
ENSDARG00000002330 | lhx8a
Description
LIM homeobox 8a [Source:ZFIN;Acc:ZDB-GENE-031008-2]
Coordinates
chr2:11422196-11424037:+
Coord C1 exon
chr2:11422196-11422382
Coord A exon
chr2:11423315-11423455
Coord C2 exon
chr2:11423916-11424037
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATTATCGTTTTTAGGCT
3' ss Score
9.9
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
ACGGAGGAAAACAAAAGTTTGAGTTAAAACATGGTCGCGACGTGCGTTCAGCAGCAGCGGCAGCAGCACCTATATGGATTAATTCTCTCTGTACAGGAGATCTGAGAGTGGATATAGCCTGTCATACTGGACAATGTACTGGAAAAATGAACAAACCACATCGAAAGAGAGCCCAAGCAAGAACACT
Seq A exon
GCTAAAACTCAAGACCTGTTTGAAGAGGTATCGTGTTCGTCGTCGTTGTCTTTGTCGCCAAGCTCTTCACCTCATACCATGACAAAGAAAGCCATATGTACCAGTTGCGGAACTGAGATTGTAGATAAATATCTCCTCAAG
Seq C2 exon
GTGAACGACATGTGCTGGCACGTGAGATGCCTGTCCTGCAGCGTGTGCCAAACATCTCTGGGCAGACACATCAGCTGTTATATAAAAGAAAAGGAGATATTTTGTAAACTGGATTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002330-'0-2,'0-1,4-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0041217=LIM=PU(24.1=29.8)
C2:
PF0041217=LIM=FE(69.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAAAACATGGTCGCGACGTG
R:
TAACAGCTGATGTGTCTGCCC
Band lengths:
245-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]